Motif J3_17917.1 Version J3_17917.1 of this group appears in releases 4.0 to 4.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10		11	break		12		13		14		15		16		17		18		19		20		21		22		23		24	break		25		26	1-26	2-6	2-20	3-7	4-17	6-19	7-15	7-20	8-21	8-23	9-13	9-22	10-13	11-12	14-21	15-19	16-20	24-25
1	J3_9E6Q_002	9E6Q	0.1213	1	1	LSU rRNA	C	505	U	506	G	507	A	508	A	509	A	510	A	511	G	512	A	513	A	514	C	515	*	G	526	G	527	G	528	U	529	G	530	A	531	A	532	A	533	A	534	G	535	A	536	C	538	C	539	*	G	23	G	24	cWW	tWH	ncSs	tSH	tHH	tWW	csS	tWW	tSS	cWW		ntHH	tHS	cWW	cWB	tWH	tSH	cWW
2	J3_9AXU_006	9AXU	0.0933	2	2+4	LSU rRNA + 5.8S rRNA	A	377	U	378	G	379	A	380	A	381	A	382	A	383	G	384	A	385	A	386	C	387	*	G	398	A	399	G	400	U	401	U	402	A	403	A	404	A	405	A	407	G	408	U	409	C	411	G	412	*	C	27	U	28	cWW	tWH	cSs	tSH	tHH	tWW	ncsS	tWW	ntSS	cWW	cSW		tHS	cWW	cWB	tWH	ntSH	cWW
3	J3_8OI5_006	8OI5	0.0923	2	1+4	LSU rRNA + 5.8S rRNA	A	369	U	370	G	371	A	372	A	373	A	374	A	375	G	376	A	377	A	378	C	379	*	G	390	A	391	G	392	U	393	G	394	A	395	A	396	A	397	A	399	G	400	U	401	C	403	G	404	*	C	19	U	20	cWW	tWH	cSs	tSH	tHH	tWW	ncsS	tWW	ntSS	cWW	ncSW		tHS	cWW	cWB	tWH	tSH	cWW
4	J3_8P9A_047	8P9A	0.0896	2	AR+AT	LSU rRNA + 5.8S rRNA	A	369	U	370	G	371	A	372	A	373	A	374	A	375	G	376	A	377	A	378	C	379	*	G	390	A	391	G	392	U	393	G	394	A	395	A	396	A	397	A	399	G	400	U	401	C	403	G	404	*	C	19	U	20	cWW	tWH	cSs	tSH	tHH	tWW	ncsS	tWW	tSS	cWW	cSW		tHS	cWW	cWB	tWH	tSH	cWW
5	J3_8GLP_026	8GLP	0.0000	2	L5+L8	LSU rRNA + 5.8S rRNA	U	380	U	381	G	382	A	383	A	384	A	385	A	386	G	387	A	388	A	389	C	390	*	G	401	A	402	G	403	U	404	U	405	C	406	A	407	A	408	A	410	G	411	G	412	C	414	G	415	*	C	19	A	20	cWW	tWH	ncSs	tSH	tHH	tWW	csS	tWW	ntSS	cWW	cSW		tHS	cWW	cWB	tWH	ntSH	cWW
6	J3_4WF9_011	4WF9	0.1185	2	X	LSU rRNA	G	520	U	521	G	522	A	523	A	524	A	525	A	526	G	527	C	528	A	529	C	530	*	G	541	A	542	G	543	U	544	G	545	A	546	A	547	A	548	A	550	G	551	A	552	C	554	C	555	*	G	30	C	31	cWW	tWH	cSs	ntSH	tHH	tWW		tWW	tSS	cWW	cSW		tHS	cWW	cWB	tWH	ntSH	cWW
7	J3_8B0X_032	8B0X	0.1301	2	a	LSU rRNA	G	474	C	475	G	476	A	477	A	478	A	479	A	480	G	481	A	482	A	483	C	484	*	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	C	510	*	G	30	C	31	cWW	ntWH	ncSs	tSH	tHH	tWW	csS	tWW	tSS	cWW	cSW	ntHH	tHS	cWW	cWB	tWH	tSH	cWW
8	J3_9DFE_002	9DFE	0.1521	2	1A	LSU rRNA	G	474	U	475	G	476	A	477	A	478	A	479	A	480	G	481	A	482	A	483	C	484	*	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	C	510	*	G	30	C	31	cWW	tWH	cSs	tSH	tHH	tWW	csS	tWW	tSS	cWW	cSW	ntHH	tHS	cWW	cWB	tWH	tSH	cWW
9	J3_7A0S_015	7A0S	0.1819	2	X	LSU rRNA	G	485	U	486	G	487	A	488	A	489	A	490	A	491	G	492	A	493	A	494	C	495	*	G	506	A	507	G	508	U	509	G	510	A	511	A	512	A	513	A	515	G	516	A	517	C	519	C	520	*	G	30	C	31	cWW	tWH	cSs	ntSH	tHH	tWW	ncsS	tWW	tSS	cWW	cSW	ntHH	tHS	cWW	cWB	tWH	ntSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAAAAGAACGAGUGAAAAAGUACGCU	2
GGCUGAAAAGAACGGGUGAAAAGAGCC	1
AUGAAAAGAACGAGUUAAAUAGUACGCU	1
UUGAAAAGAACGAGUUCAAGAGGGCGCA	1
GCGUGAAAAGCACGAGUGAAAUAGAACC	1
GCGCGAAAAGAACGAGUGAAAAAGAACC	1
GCGUGAAAAGAACGAGUGAAAUAGAGCC	1
GCGUGAAAAGAACGAGUGAAAGAGAACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAAAGAAAGUGAAAAAGUAC	2
UGAAAAGAAGGUGAAAAGAGC	1
UGAAAAGAAAGUUAAAUAGUAC	1
UGAAAAGAAAGUUCAAGAGGGC	1
UGAAAAGCAAGUGAAAUAGAAC	1
CGAAAAGAAAGUGAAAAAGAAC	1
UGAAAAGAAAGUGAAAUAGAGC	1
UGAAAAGAAAGUGAAAGAGAAC	1

Release history

Release	4.0	4.1	4.2	4.3	4.4	4.5	4.6
Date	2025-08-13	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31	2026-01-28
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Basepair signature: cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
Heat map statistics: Min 0.07 | Avg 0.13 | Max 0.24

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Coloring options: Nucleotide numbers

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