Motif J3_23895.1 Version J3_23895.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | 4-5 | 10-14 | 12-13 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8GLP_044 | 8GLP | 0.0000 | 1 | S2 | SSU rRNA | A | 938 | U | 939 | U | 940 | C | 941 | * | G | 985 | G | 986 | A | 987 | C | 988 | C | 989 | A | 990 | A | 992 | G | 993 | * | C | 1000 | A | 1001 | U | 1002 | U | 1003 | PSU | 1004 | cWW | cwW | ncwW | cWW | tWW | cWW |
| 2 | J3_8P9A_074 | 8P9A | 0.1749 | 1 | sR | SSU rRNA | A | 881 | U | 882 | C | 883 | A | 884 | * | U | 928 | A | 929 | A | 930 | C | 931 | U | 932 | A | 933 | U | 935 | G | 936 | * | C | 943 | A | 944 | U | 945 | U | 946 | U | 947 | cWW | cwW | cWW | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUC*GGACCAGAG*CAUUPSU | 1 |
| AUCA*UAACUACUG*CAUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*GACCAGA*AUU | 1 |
| UC*AACUACU*AUU | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.17 | Avg 0.09 | Max 0.17
Coloring options: