Motif J3_28621.3 Version J3_28621.3 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-6 | 5-10 | 5-11 | 7-8 | 9-12 | 10-11 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_8C3A_005 | 8C3A | 0.2299 | 0 | 1 | LSU rRNA | G | 1252 | C | 1253 | U | 1254 | A | 1255 | A | 1256 | G | 1257 | G | 1258 | * | C | 1273 | A | 1274 | C | 1275 | * | G | 1226 | A | 1227 | C | 1228 | cWW | tWW | ncSs | ntsS | cWW | cWW | |
2 | J3_5J7L_040 | 5J7L | 0.1257 | 0 | DA | LSU rRNA | U | 1081 | U | 1082 | U | 1083 | A | 1084 | A | 1085 | A | 1086 | G | 1087 | * | C | 1102 | A | 1103 | C | 1104 | * | G | 1055 | G | 1056 | A | 1057 | cWW | tWW | cSs | tSs | cWW | tHS | cWW |
3 | J3_5D8H_001 | 5D8H | 0.0000 | 0 | A | LSU rRNA | U | 1191 | U | 1192 | U | 1193 | A | 1194 | A | 1195 | A | 1196 | G | 1197 | * | C | 1212 | A | 1213 | C | 1214 | * | G | 1165 | G | 1166 | A | 1167 | cWW | tWW | ncSs | tSs | cWW | tHS | cWW |
4 | J3_1MMS_001 | 1MMS | 0.0898 | 0 | C | 23S RIBOSOMAL RNA | U | 1081 | U | 1082 | U | 1083 | A | 1084 | A | 1085 | A | 1086 | G | 1087 | * | C | 1102 | A | 1103 | C | 1104 | * | G | 1055 | G | 1056 | A | 1057 | cWW | tWW | ncSs | tSs | cWW | tHS | cWW |
5 | J3_6PRV_001 | 6PRV | 0.1098 | 0 | A | LSU rRNA | U | 1081 | U | 1082 | U | 1083 | A | 1084 | A | 1085 | A | 1086 | G | 1087 | * | C | 1102 | A | 1103 | C | 1104 | * | G | 1055 | G | 1056 | A | 1057 | cWW | tWW | cSs | tSs | cWW | tHS | cWW |
6 | J3_4V9F_004 | 4V9F | 0.1280 | 0 | 0 | LSU rRNA | U | 1185 | C | 1186 | U | 1187 | A | 1188 | A | 1189 | G | 1190 | A | 1191 | * | U | 1206 | A | 1207 | C | 1208 | * | G | 1159 | G | 1160 | A | 1161 | cWW | tWW | tSs | cWW | cWW | ||
7 | J3_5TBW_007 | 5TBW | 0.2297 | 0 | 1 | LSU rRNA | G | 1256 | C | 1257 | U | 1258 | A | 1259 | A | 1260 | G | 1261 | G | 1262 | * | C | 1277 | A | 1278 | C | 1279 | * | G | 1230 | A | 1231 | C | 1232 | ncWW | tWW | ncSs | ntSs | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGA*UUUAAAG*CAC | 4 |
GAC*GCUAAGG*CAC | 2 |
GGA*UCUAAGA*UAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*UUAAA*A | 4 |
A*CUAAG*A | 2 |
G*CUAAG*A | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.16 | Max 0.27
Coloring options: