Motif J3_37047.2 Version J3_37047.2 of this group appears in releases 3.18 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11	break		12		13		14		15	1-15	2-3	4-14	5-6	6-13	7-8	11-12	13-15
1	J3_4V88_041	4V88	0.3294	2	A6	SSU rRNA	C	1533	G	1534	U	1535	G	1536	C	1537	U	1538	G	1540	*	C	1571	G	1572	A	1573	G	1574	*	C	1470	A	1471	C	1472	G	1474	cWW				tWH	cWW	cWW	ncsS
2	J3_6CZR_026	6CZR	0.1550	2	1a	SSU rRNA	C	1278	C	1279	C	1280	A	1281	G	1282	U	1283	C	1285	*	G	1316	C	1317	C	1318	G	1319	*	C	1219	A	1220	A	1221	G	1223	cWW	ncSH		ncSH	tWH	cWW	cWW	csS
3	J3_4LFB_009	4LFB	0.0000	2	A	SSU rRNA	C	1296	C	1297	C	1298	A	1299	G	1300	U	1301	C	1303	*	G	1334	C	1335	C	1336	G	1337	*	C	1237	A	1238	A	1239	G	1241	cWW	cSH	ntHH	ncSH	tWH	cWW	cWW	ncsS
4	J3_5J7L_011	5J7L	0.1454	2	AA	SSU rRNA	C	1296	G	1297	U	1298	A	1299	G	1300	U	1301	C	1303	*	G	1334	U	1335	C	1336	G	1337	*	C	1237	A	1238	A	1239	G	1241	cWW			cSH	tWH	cWW	cWW	ncsS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAUGCCCAGUUCGCCG	2
CACUGCGUGCUGGCGAG	1
CAAUGCGUAGUCCGUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAUCCAGUUCC	2
ACUGUGCUGGA	1
AAUGUAGUCUC	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
Heat map statistics: Min 0.15 | Avg 0.16 | Max 0.33

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Coloring options: Nucleotide numbers

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