Motif J3_37832.1 Version J3_37832.1 of this group appears in releases 4.0 to 4.5

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6		7		8		9		10	break		11		12		13	1-8	1-13	2-12	3-4	5-9	8-13	10-11
1	J3_8P9A_052	8P9A	0.1543	0	AR	LSU rRNA	G	1230	A	1231	C	1232	*	G	1256	C	1257	U	1258	A	1259	A	1260	G	1261	G	1262	*	C	1277	A	1278	C	1279	ntsS	cWW	tSH	cWW	ntWW	cSs	cWW
2	J3_6PRV_001	6PRV	0.1098	0	A	LSU rRNA	G	1055	G	1056	A	1057	*	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	tsS	cWW	tSH	cWW	tWW	cSs	cWW
3	J3_1MMS_002	1MMS	0.0928	0	D	LSU rRNA	G	1055	G	1056	A	1057	*	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	tsS	cWW	tSH	cWW	tWW	ncSs	cWW
4	J3_5D8H_001	5D8H	0.0000	0	A	LSU rRNA	G	1165	G	1166	A	1167	*	U	1191	U	1192	U	1193	A	1194	A	1195	A	1196	G	1197	*	C	1212	A	1213	C	1214	tsS	cWW	tSH	cWW	tWW	ncSs	cWW
5	J3_4V9F_004	4V9F	0.1280	0	0	LSU rRNA	G	1159	G	1160	A	1161	*	U	1185	C	1186	U	1187	A	1188	A	1189	G	1190	A	1191	*	U	1206	A	1207	C	1208	tsS	cWW		cWW	tWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAUUUAAAGCAC	3
GACGCUAAGGCAC	1
GGAUCUAAGAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUAAAA	3
ACUAAGA	1
GCUAAGA	1

Release history

Release	4.0	4.1	4.2	4.3	4.4	4.5
Date	2025-08-13	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Heat map statistics: Min 0.09 | Avg 0.11 | Max 0.17

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Coloring options: Nucleotide numbers

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