Motif J3_40706.1 Version J3_40706.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 3-4 | 5-15 | 6-14 | 7-17 | 8-10 | 9-12 | 9-18 | 10-11 | 12-18 | 13-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8B0X_031 | 8B0X | 0.0000 | 1 | A | SSU rRNA | U | 1116 | A | 1117 | U | 1118 | * | A | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | * | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | cWW | cWW | tSW | tWS | cWW | cSH | cWW | cHW | cWW | ncHH | tWH |
| 2 | J3_4LFB_018 | 4LFB | 0.1058 | 1 | A | SSU rRNA | C | 1116 | G | 1117 | C | 1118 | * | G | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | * | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | cWW | cWW | tSW | tWS | cWW | cSH | cWW | cHW | cWW | ncHH | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAU*AGACUGC*GAGGAAGGUG | 1 |
| CGC*GGACUGC*GAGGAAGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GACUG*AGGAAGGU | 1 |
| G*GACUG*AGGAAGGA | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.05 | Max 0.11
Coloring options: