Motif J3_41339.1 Version J3_41339.1 of this group appears in releases 3.92 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 1-20 | 3-19 | 5-9 | 6-7 | 8-11 | 13-14 | 13-17 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_6JQ6_003 | 6JQ6 | 0.0000 | 2 | U | Hatchet ribozyme | G | 27||||11_555 | U | 28||||11_555 | G | 29||||11_555 | G | 30||||11_555 | G | 31||||11_555 | G | 32||||11_555 | * | U | 62||||11_555 | G | 63||||11_555 | C | 64||||11_555 | A | 65||||11_555 | G | 66||||11_555 | A | 67||||11_555 | C | 68||||11_555 | * | G | 69 | U | 70 | A | 72 | A | 73 | A | 74||A | A | 75 | C | 77 | cWW | tSH | cWW | cWW | cWH | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGGG*UGCAGAC*GUUAAAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGG*GCAGA*UUAAAAC | 1 |
Release history
| Release | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|
| Date | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-cWH-cWW-F-F-tHS-F-F-cWW-cWW-cSW-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: