Motif J3_41486.2 Version J3_41486.2 of this group appears in releases 3.89 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_2OIU_002 | 2OIU | 0.6838 | 0 | Q | L1 Ribozyme RNA Ligase | C | 42 | A | 43 | G | 44 | G | 45 | * | C | 7 | G | 8 | * | C | 17 | G | 18 | cWW | cWW | cWW |
| 2 | J3_4PQV_001 | 4PQV | 0.1260 | 1 | A | Flavivirus 3' UTR stem loop IV | G | 39 | C | 40 | A | 41 | A | 42 | * | U | 9 | C | 10 | * | G | 21 | C | 23 | cWW | cWW | cWW |
| 3 | J3_5T5A_001 | 5T5A | 0.0000 | 1 | A | DNA/RNA (71-MER) | C | 13 | C | 14 | A | 15 | G | 16 | * | C | 34 | C | 35 | * | G | 46 | G | 48 | cWW | cWW | cWW |
| 4 | J3_5TPY_002 | 5TPY | 0.0952 | 1 | A | RNA (71-MER) | G | 43 | C | 44 | A | 45 | G | 46 | * | C | 9 | C | 10 | * | G | 21 | C | 23 | cWW | cWW | cWW |
| 5 | J3_7U4A_001 | 7U4A | 0.1416 | 1 | A | RNA (70-MER) | G | 43 | C | 44 | A | 45 | G | 46 | * | C | 9 | C | 10 | * | G | 21 | C | 23 | cWW | cWW | cWW |
| 6 | J3_7K16_001 | 7K16 | 0.8218 | 1 | P | RNA (51-MER) | C | 40 | C | 41 | C | 42 | C | 44 | * | G | 7 | U | 8 | * | A | 23 | G | 24 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GCC*GCAG | 2 |
| CG*CG*CAGG | 1 |
| UC*GCC*GCAA | 1 |
| CCAG*CC*GCG | 1 |
| GU*AG*CCCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *C*CA | 3 |
| **AG | 1 |
| CA**C | 1 |
| **CCU | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-cWW-F-cWW
- Heat map statistics
- Min 0.10 | Avg 0.43 | Max 0.90
Coloring options: