#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8break 9 10 11 121-122-102-113-73-115-68-9
1 J3_5J7L_0425J7L0.17902DA LSU rRNAC1605C1606A1608A1610C1611*G1620U1621G1622*C1306A1307A1308G1309cWWntSHtHWtWWcWWcWW
2 J3_4V9F_0064V9F0.105020 LSU rRNAC1680G1681A1682A1685C1686*G1695U1696G1697*U1412A1413A1414G1415cWWtSHtHWtWWcWWcWW
3 J3_5TBW_0095TBW0.000021 LSU rRNAU1837G1838A1839A1842C1843*G1852U1853C1854*G1488A1489A1490A1491cWWntSHtHWntWWcWWcWW
4 J3_8C3A_0078C3A0.095621 LSU rRNAU1833C1834A1835A1838C1839*G1848U1849C1850*G1484A1485A1486A1487cWWntSHtHWntWWcWWcWW
5 J3_4V9F_0054V9F0.704520 LSU rRNAC1404U1405A1407U1408G1409*C1700A1701G1703*C1715A1716A1717G1718cWWtWHtWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAG*CCCAAAC*GUG1
UAAG*CGAGAAC*GUG1
GAAA*UGAUAAC*GUC1
GAAA*UCAUAAC*GUC1
CUAAUG*CAUG*CAAG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*CCAAA*U1
AA*GAGAA*U1
AA*GAUAA*U1
AA*CAUAA*U1
UAAU*AU*AA1

Release history

Release3.803.813.823.833.843.853.863.873.88
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-tSH-tWW-tHW-F-F-cWW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.30 | Max 0.77
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