Motif J3_42157.3 Version J3_42157.3 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-7 | 3-11 | 5-6 | 8-9 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_5J7L_042 | 5J7L | 0.1790 | 2 | DA | LSU rRNA | C | 1605 | C | 1606 | A | 1608 | A | 1610 | C | 1611 | * | G | 1620 | U | 1621 | G | 1622 | * | C | 1306 | A | 1307 | A | 1308 | G | 1309 | cWW | ntSH | tHW | tWW | cWW | cWW | |
2 | J3_4V9F_006 | 4V9F | 0.1050 | 2 | 0 | LSU rRNA | C | 1680 | G | 1681 | A | 1682 | A | 1685 | C | 1686 | * | G | 1695 | U | 1696 | G | 1697 | * | U | 1412 | A | 1413 | A | 1414 | G | 1415 | cWW | tSH | tHW | tWW | cWW | cWW | |
3 | J3_5TBW_009 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | U | 1837 | G | 1838 | A | 1839 | A | 1842 | C | 1843 | * | G | 1852 | U | 1853 | C | 1854 | * | G | 1488 | A | 1489 | A | 1490 | A | 1491 | cWW | ntSH | tHW | ntWW | cWW | cWW | |
4 | J3_8C3A_007 | 8C3A | 0.0956 | 2 | 1 | LSU rRNA | U | 1833 | C | 1834 | A | 1835 | A | 1838 | C | 1839 | * | G | 1848 | U | 1849 | C | 1850 | * | G | 1484 | A | 1485 | A | 1486 | A | 1487 | cWW | ntSH | tHW | ntWW | cWW | cWW | |
5 | J3_4V9F_005 | 4V9F | 0.7045 | 2 | 0 | LSU rRNA | C | 1404 | U | 1405 | A | 1407 | U | 1408 | G | 1409 | * | C | 1700 | A | 1701 | G | 1703 | * | C | 1715 | A | 1716 | A | 1717 | G | 1718 | cWW | tWH | tWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAG*CCCAAAC*GUG | 1 |
UAAG*CGAGAAC*GUG | 1 |
GAAA*UGAUAAC*GUC | 1 |
GAAA*UCAUAAC*GUC | 1 |
CUAAUG*CAUG*CAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA*CCAAA*U | 1 |
AA*GAGAA*U | 1 |
AA*GAUAA*U | 1 |
AA*CAUAA*U | 1 |
UAAU*AU*AA | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.30 | Max 0.77
Coloring options: