#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9break 10 11 121-122-114-75-69-10
1 J3_4V9F_0034V9F0.244410 LSU rRNAU823G824U826A827G828*C853G854U855G856*C789A790A791cWWtSHtHScWWcWW
2 J3_7A0S_0057A0S0.09660X LSU rRNAC745G746A747A748C749*G773A774U775G776*C711A712G713cWWtSHntHScWWcWW
3 J3_4WF9_0034WF90.07190X LSU rRNAC777G778A779A780C781*G805A806U807G808*C743A744G745cWWtSHtHScWWcWW
4 J3_8VTW_0028VTW0.000001A LSU rRNAC732G733A734A735C736*G760A761U762G763*C698A699G700cWWtSHtHScWWcWW
5 J3_5J7L_0395J7L0.06820DA LSU rRNAC732G733A734A735C736*G760A761U762G763*C698A699G700cWWtSHtHScWWcWW
6 J3_8C3A_0048C3A0.207901 LSU rRNAC859G860U861A862G863*U888C889G890A891*U825A826G827cWWtSHtHScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CGAAC*GAUG4
CAA*UGUUAG*CGUG1
UAG*CGUAG*UCGA1
Non-Watson-Crick part of the motif
SequenceCounts
A*GAA*AU4
A*GUUA*GU1
A*GUA*CG1

Release history

Release3.873.883.89
Date2024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-tSH-F-cWW-tHS-cWW-F
    Heat map statistics
    Min 0.07 | Avg 0.14 | Max 0.24
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