Motif J3_45099.1 Version J3_45099.1 of this group appears in releases 3.95 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 1-19 | 2-18 | 4-15 | 6-13 | 7-12 | 8-11 | 9-10 | 15-16 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1HMH_004 | 1HMH | 0.0000 | 0 | A+B | HAMMERHEAD RIBOZYME-RNA STRAND + HAMMERHEAD RIBOZYME-DNA STRAND | C | 21 | C | 30 | U | 40 | G | 50 | A | 60 | U | 70 | G | 80 | A | 90 | G | 101 | * | C | 111 | G | 120 | A | 130 | A | 140 | A | 151 | C | 152 | * | DG | 162 | DT | 161 | DC | 170 | DG | 11 | cWW | ncWw | cSW | tSH | tHS | cWW | cWW | |
| 2 | J3_359D_001 | 359D | 0.1419 | 0 | A+B | RNA HAMMERHEAD RIBOZYME | U | 21 | C | 30 | U | 40 | G | 50 | A | 60 | U | 70 | G | 80 | A | 90 | G | 101 | * | C | 111 | G | 120 | A | 130 | A | 140 | A | 151 | C | 152 | * | G | 162 | U | 161 | C | 170 | A | 11 | cWW | cWw | cSs | cSW | tSH | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAUGAG*CGAAAC*DG(DT)(DC)DG | 1 |
| UCUGAUGAG*CGAAAC*GUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAUGA*GAAA*(DT)(DC) | 1 |
| CUGAUGA*GAAA*UC | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cSW-F-tSH-tHS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.07 | Max 0.14
Coloring options: