Motif J3_53439.1 Version J3_53439.1 of this group appears in releases 3.88 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 1-16 | 3-12 | 4-11 | 6-9 | 7-8 | 13-16 | 14-15 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_3SUX_001 | 3SUX | 0.0000 | 1 | X | U | 23 | A | 25 | A | 26 | G | 27 | U | 28 | G | 29 | C | 30 | * | G | 56 | A | 57 | C | 58 | G | 59 | A | 60 | A | 61 | C | 62 | * | G | 73 | G | 74 | cWW | tHW | cBW | cWW | cWW | tSs | cWW |
| 2 | J3_4LVW_001 | 4LVW | 0.1091 | 1 | A | U | 20 | A | 22 | A | 23 | G | 24 | U | 25 | G | 26 | U | 27 | * | A | 51 | A | 52 | C | 53 | G | 54 | A | 55 | A | 56 | G | 57 | * | C | 64 | G | 65 | cWW | tHW | cBW | cWW | cWW | tSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAAGUGC*GACGAAC*GG | 1 |
| UUAAGUGU*AACGAAG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGUG*ACGAA* | 1 |
| UAAGUG*ACGAA* | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSS-F-cWW-tHW-F-F-cWW-F-cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.05 | Max 0.11
Coloring options: