Motif J3_56052.1 Version J3_56052.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 1-8 | 3-4 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1KUQ_001 | 1KUQ | 0.2913 | 1 | B | 16S RIBOSOMAL RNA FRAGMENT | C | 4 | G | 5 | G | 6 | * | C | 15 | U | 16 | G | 18 | * | C | 53 | G | 54 | cWW | cWW | cWW |
| 2 | J3_5J7L_002 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | * | C | 754 | G | 755 | cWW | cWW | cWW |
| 3 | J3_1G1X_001 | 1G1X | 0.2031 | 1 | D+E | 16S RIBOSOMAL RNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | * | C | 754 | G | 755 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGG*CUAG*CG | 2 |
| CGG*CUUG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UA* | 2 |
| G*UU* | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-cWW-cWW-F
- Heat map statistics
- Min 0.20 | Avg 0.19 | Max 0.36
Coloring options: