Motif J3_58657.1 Version J3_58657.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-3 | 8-11 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_068 | 8P9A | 0.0697 | 0 | sR | SSU rRNA | A | 41 | G | 42 | * | C | 433 | G | 434 | C | 435 | A | 436 | A | 437 | A | 438 | U | 439 | * | A | 464 | G | 465 | U | 466 | cWW | cWW | cSW | cWW |
| 2 | J3_8GLP_040 | 8GLP | 0.0000 | 0 | S2 | SSU rRNA | A | 40 | G | 41 | * | C | 481 | G | 482 | C | 483 | A2M | 484 | A | 485 | A | 486 | U | 487 | * | A2M | 512 | G | 513 | U | 514 | cWW | cWW | cSW | cWW |
| 3 | J3_8CRE_071 | 8CRE | 0.0694 | 0 | CM | SSU rRNA | A | 41 | G | 42 | * | C | 431 | G | 432 | C | 433 | A | 434 | A | 435 | A | 436 | U | 437 | * | A | 462 | G | 463 | U | 464 | cWW | cWW | cSW | cWW |
| 4 | J3_8B0X_001 | 8B0X | 0.1899 | 0 | A | SSU rRNA | G | 46 | C | 47 | * | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | A | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | cWW | cWW | cSW | cWW |
| 5 | J3_4LFB_010 | 4LFB | 0.2066 | 0 | A | SSU rRNA | G | 46 | C | 47 | * | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | C | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | cWW | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*CGCAAAU*AGU | 2 |
| AG*CGC(A2M)AAU*A2MGU | 1 |
| GC*GGAAUAU*AGC | 1 |
| GC*GGAAUCU*AGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GCAAA*G | 2 |
| *GC(A2M)AA*G | 1 |
| *GAAUA*G | 1 |
| *GAAUC*G | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.12 | Max 0.22
Coloring options: