Motif J3_63596.1 Version J3_63596.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 7-8 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8VTW_043 | 8VTW | 0.1601 | 1 | 1A | LSU rRNA | G | 1344 | C | 1345 | G | 1346 | G | 1347 | G | 1348 | A | 1349 | C | 1350 | * | G | 1381 | G | 1382 | C | 1383 | G | 1385 | * | C | 1402 | C | 1403 | cWW | cWW | cWW |
| 2 | J3_7A0S_018 | 7A0S | 0.0000 | 1 | X | LSU rRNA | U | 1357 | C | 1358 | G | 1359 | G | 1360 | G | 1361 | A | 1362 | C | 1363 | * | G | 1394 | A | 1395 | C | 1396 | G | 1398 | * | C | 1415 | A | 1416 | cWW | cWW | cWW |
| 3 | J3_4WF9_016 | 4WF9 | 0.1631 | 1 | X | LSU rRNA | U | 1381 | C | 1382 | G | 1383 | G | 1384 | G | 1385 | U | 1386 | C | 1387 | * | G | 1418 | A | 1419 | U | 1420 | A | 1422 | * | U | 1439 | A | 1440 | cWW | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGGGAC*GGCAG*CC | 1 |
| UCGGGAC*GACAG*CA | 1 |
| UCGGGUC*GAUAA*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGGGA*GCA* | 1 |
| CGGGA*ACA* | 1 |
| CGGGU*AUA* | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWW
- Heat map statistics
- Min 0.16 | Avg 0.11 | Max 0.19
Coloring options: