#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9break 10 111-112-67-89-10
1 J3_6VMY_0016VMY0.32440ACobalamin riboswitchC237U238U239A240A241A242A243*U311G312*U213G214cWWtWHcWWcWW
2 J3_1MFQ_0021MFQ0.00001A SRP RNAG168C170U171A172A173G174G175*C221G222*U128C129ncWWcWWcWW
3 J3_3MOJ_0013MOJ0.70260A LSU rRNAU2561U2562U2563A2564A2565A2566G2567*C2517A2518*U2546A2547ncWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UG*CUUAAAA*UG1
UC*GCCUAAGG*CG1
CA*UA*UUUAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
*UUAAA*1
*CCUAAG*1
**UUAAA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-F-cWW-F-F-cWW-F-F
    Heat map statistics
    Min 0.32 | Avg 0.39 | Max 0.71
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