Motif J3_76247.1 Version J3_76247.1 of this group appears in releases 4.0 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 1-16 | 3-6 | 4-5 | 10-15 | 11-14 | 12-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_060 | 8P9A | 0.0000 | 9 | AR | LSU rRNA | A | 2529 | G | 2530 | C | 2531 | U | 2532 | * | A | 2547 | C | 2548 | G | 2555 | C | 2556 | A | 2557 | A | 2561 | A | 2562 | G | 2563 | * | U | 2578 | G | 2579 | A | 2580 | U | 2581 | cWW | ncBW | cWW | tHH | tHS | cWW |
| 2 | J3_8OI5_019 | 8OI5 | 0.2160 | 8 | 1 | LSU rRNA | A | 2507 | G | 2508 | C | 2509 | U | 2510 | * | A | 2525 | C | 2526 | G | 2533 | C | 2534 | A | 2535 | A | 2538 | A | 2539 | G | 2540 | * | C | 2550 | G | 2551 | A | 2552 | U | 2553 | cWW | cBW | cWW | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCU*ACGUUCUAGCAUUCAAG*UGAU | 1 |
| AGCU*ACGUUCUAGCAUUAAG*CGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*CGUUCUAGCAUUCAA*GA | 1 |
| GC*CGUUCUAGCAUUAA*GA | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.22 | Avg 0.11 | Max 0.22
Coloring options: