Motif J3_80578.1 Version J3_80578.1 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 1-10 | 2-9 | 5-6 | 7-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4QK9_002 | 4QK9 | 0.0000 | 0 | A | C-di-AMP riboswitch | U | 6 | G | 7 | A | 8 | A | 9 | U | 10 | * | A | 23 | A | 24 | * | U | 108 | A | 109 | A | 110 | cWW | tSH | cWW | cWW |
| 2 | J3_4W90_002 | 4W90 | 0.2503 | 0 | C | cyclic di-AMP riboswitch | U | 7 | U | 8 | A | 9 | A | 10 | U | 11 | * | A | 22 | G | 23 | * | U | 111 | A | 112 | A | 113 | cWW | ntSW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAU*AA*UAA | 1 |
| UUAAU*AG*UAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA**A | 1 |
| UAA**A | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-cWW-F-cWW
- Heat map statistics
- Min 0.25 | Avg 0.13 | Max 0.25
Coloring options: