Motif J3_83332.1 Version J3_83332.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 7-8 | 9-10 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_8UO6_001 | 8UO6 | 0.0000 | 2 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | G | 63 | G | 64 | A | 66 | C | 67 | A | 68 | G | 69 | G | 70 | * | U | 90 | A | 91 | * | U | 37 | G | 39 | G | 40 | C | 41 | cWW | cHW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGGGC*GGUACAGG*UA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGG*GUACAG* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-cHW-F-F-F-cWW-F-F-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: