Motif J3_85054.4 Version J3_85054.4 of this group appears in releases 3.96 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-7 | 2-13 | 3-6 | 4-5 | 7-12 | 8-11 | 8-13 | 9-10 | 11-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_001 | 4LFB | 0.1934 | 2 | A | SSU rRNA | C | 826 | U | 827 | A | 828 | G | 829 | * | C | 857 | G | 858 | A | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | cWW | cSW | tWW | tHS | cWW | tHS | ntWH | cWW | ||
| 2 | J3_5J7L_004 | 5J7L | 0.0000 | 2 | AA | SSU rRNA | C | 826 | U | 827 | U | 828 | G | 829 | * | C | 857 | G | 858 | G | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | cWW | tWW | tHS | cWW | tHS | ntWH | cWW | |||
| 3 | J3_1G1X_006 | 1G1X | 0.7954 | 1 | I+J | 16S RIBOSOMAL RNA | C | 586 | G | 587 | G | 588 | C | 589 | * | G | 650 | C | 651 | U | 652 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CGAAG*CGUUAAG | 1 |
| CUUG*CGGAG*CGUUAAG | 1 |
| CGGC*GCUAGA*UGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA*GUUAA | 1 |
| UU*GGA*GUUAA | 1 |
| GG*CUAG*GAC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Heat map statistics
- Min 0.19 | Avg 0.42 | Max 0.91
Coloring options: