Motif J3_89060.1 Version J3_89060.1 of this group appears in releases 4.0 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 4-5 | 6-13 | 7-12 | 8-11 | 9-10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_059 | 8P9A | 0.0000 | 1 | AR | LSU rRNA | A | 2432 | U | 2433 | U | 2434 | G | 2435 | * | C | 2512 | U | 2513 | A | 2515 | U | 2516 | U | 2517 | * | A | 2590 | A | 2591 | G | 2592 | A | 2593 | C | 2594 | A | 2595 | U | 2596 | U | 2597 | cWW | ncwW | cWW | tWH | tHS | ntHS | cWW |
| 2 | J3_8OI5_018 | 8OI5 | 0.0776 | 1 | 1 | LSU rRNA | A | 2410 | U | 2411 | U | 2412 | G | 2413 | * | C | 2490 | U | 2491 | A | 2493 | U | 2494 | U | 2495 | * | A | 2562 | A | 2563 | G | 2564 | A | 2565 | C | 2566 | A | 2567 | U | 2568 | U | 2569 | cWW | ncwW | cWW | tWH | tHS | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUG*CUUAUU*AAGACAUU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UUAU*AGACAU | 2 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: