Motif J3_89368.5 Version J3_89368.5 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-4 | 5-10 | 6-9 | 7-8 | 7-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9DFE_014 | 9DFE | 0.1355 | 1 | 1A | LSU rRNA | U | 2091 | U | 2092 | G | 2093 | * | C | 2196 | U | 2197 | A | 2199 | C | 2200 | * | G | 2223 | G | 2224 | A | 2225 | C | 2226 | A | 2227 | G | 2228 | cWW | tHH | cWW | tWH | tHS | cWW | ||
| 2 | J3_5J7L_044 | 5J7L | 0.0000 | 1 | Kink-turn in J3 | DA | LSU rRNA | C | 2091 | U | 2092 | G | 2093 | * | C | 2196 | U | 2197 | A | 2199 | C | 2200 | * | G | 2223 | G | 2224 | A | 2225 | C | 2226 | A | 2227 | G | 2228 | cWW | tHH | cWW | tWH | tHS | cWW | ntSW |
| 3 | J3_7A0S_009 | 7A0S | 0.1508 | 1 | X | LSU rRNA | U | 2074 | U | 2075 | G | 2076 | * | C | 2179 | U | 2180 | A | 2182 | C | 2183 | * | G | 2202 | G | 2203 | A | 2204 | C | 2205 | C | 2206 | G | 2207 | cWW | tHH | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*CUAAC*GGACAG | 1 |
| CUG*CUAAC*GGACAG | 1 |
| UUG*CUAAC*GGACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UAA*GACA | 2 |
| U*UAA*GACC | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Kink-turn in J3 (1)
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Heat map statistics
- Min 0.14 | Avg 0.10 | Max 0.16
Coloring options: