Motif J3_90771.1 Version J3_90771.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 2-10 | 3-9 | 5-8 | 6-7 | 9-12 | 11-12 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_8VTW_009 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | G | 2805 | G | 2807 | U | 2808 | A | 2809 | A | 2810 | G | 2811 | * | C | 2889 | G | 2891 | A | 2892 | G | 2893 | G | 2894 | * | C | 2789 | C | 2791 | cWW | ncWB | tWH | tHS | cWW | ntSs | cWW |
2 | J3_4WF9_020 | 4WF9 | 0.2385 | 0 | X | LSU rRNA | U | 2826 | A | 2827 | U | 2828 | A | 2829 | A | 2830 | G | 2831 | * | C | 2909 | G | 2910 | A | 2911 | A | 2912 | G | 2913 | * | C | 2816 | A | 2817 | cWW | cWB | tWH | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAC*GGUAAG*CGAGG | 1 |
CA*UAUAAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*GUAA*GAG | 1 |
*AUAA*GAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-tWH-F-F-tHS-cWW
- Heat map statistics
- Min 0.24 | Avg 0.12 | Max 0.24
Coloring options: