#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10 11 12 13break 14 15break 16 17 18 19 20 21 22 23 24 25 261-262-242-253-104-84-225-96-198-219-179-2210-2311-2412-2313-1415-1617-2118-22
1 J3_7A0S_0157A0S0.09552X LSU rRNAG506A507G508U509G510A511A512A513A515G516A517C519C520*G30C31*G485U486G487A488A489A490A491G492A493A494C495cWWcWStSHcWBtWHncSsntSHtHHtWWcsStWWtSSntHHcWWcWWcWWtWHntSH
2 J3_5J7L_0665J7L0.00002DA LSU rRNAG496A497G498U499G500A501A502A503A505G506A507C509C510*G30C31*G474C475G476A477A478A479A480G481A482A483C484cWWcWStSHcWBtWHcSstSHtHHtWWncsStWWtSSntHHcWWcWWcWWntWHtSH
3 J3_8VTW_0378VTW0.087021A LSU rRNAG496A497G498U499G500A501A502A503A505G506A507C509C510*G30C31*G474U475G476A477A478A479A480G481A482A483C484cWWcWStSHcWBtWHcSstSHtHHtWWncsStWWtSSntHHcWWcWWcWWtWHtSH
4 J3_4WF9_0114WF90.10872X LSU rRNAG541A542G543U544G545A546A547A548A550G551A552C554C555*G30C31*G520U521G522A523A524A525A526G527C528A529C530cWWcWStSHcWBtWHntSHtHHtWWcsStWWtSScWWcWWcWWtWHntSH
5 J3_5TBW_0625TBW0.173121+4 LSU rRNA + 5.8S rRNAG390A391G392U393G394A395A396A397A399G400U401C403G404*C19U20*A369U370G371A372A373A374A375G376A377A378C379cWWncWStSHcWBtWHcSstSHtHHtWWtWWtSScWWcWWcWWtWHtSH
6 J3_8C3A_0498C3A0.199921+4 LSU rRNA + 5.8S rRNAG390A391G392U393G394A395A396A397A399G400U401C403G404*C19U20*A369U370G371A372A373A374A375G376A377A378C379cWWncWStSHncWBtWHncSstSHtHHtWWncsStWWntSScWWcWWcWWtWHtSH

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU2
GC*GUGAAAAGAAC*GAGUGAAAGAGAACC1
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC1
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC1
GC*GUGAAAAGCAC*GAGUGAAAUAGAACC1
Non-Watson-Crick part of the motif
SequenceCounts
UGAAAAGAA*AGUGAAAAAGUAC*2
*UGAAAAGAA*AGUGAAAGAGAAC1
*CGAAAAGAA*AGUGAAAAAGAAC1
*UGAAAAGAA*AGUGAAAUAGAGC1
*UGAAAAGCA*AGUGAAAUAGAAC1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
    Heat map statistics
    Min 0.07 | Avg 0.13 | Max 0.24
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