Motif J3_96248.1 Version J3_96248.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 1-14 | 2-9 | 3-8 | 3-12 | 4-7 | 5-6 | 10-13 | 11-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9E6Q_005 | 9E6Q | 0.0000 | 1 | 1 | LSU rRNA | C | 250 | A | 251 | A | 252 | A | 253 | C | 254 | * | G | 288 | G | 289 | G | 290 | C | 291 | U | 292 | G | 294 | * | C | 402 | G | 403 | G | 404 | cWW | tHW | tHS | ncsS | ntHS | cWW | ntHS | cWW |
| 2 | J3_4V9F_001 | 4V9F | 0.1974 | 1 | 0 | LSU rRNA | C | 240 | A | 241 | A | 242 | A | 243 | C | 244 | * | G | 267 | U | 268 | G | 269 | U | 270 | C | 271 | G | 273 | * | C | 377 | A | 378 | G | 379 | cWW | tHW | tHS | csS | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAC*GGGCUUG*CGG | 1 |
| CAAAC*GUGUCAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GGCUU*G | 1 |
| AAA*UGUCA*A | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F
- Heat map statistics
- Min 0.20 | Avg 0.10 | Max 0.20
Coloring options: