Motif J3_96372.2 Version J3_96372.2 of this group appears in releases 3.89 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 1-2 | 1-16 | 3-16 | 5-15 | 7-8 | 10-13 | 11-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_3IWN_003 | 3IWN | 0.4179 | 2 | A | C-di-GMP riboswitch | G | 4 | A | 6 | C | 7 | A | 8 | G | 9 | G | 10 | G | 11 | * | C | 36 | A | 37 | A | 38 | G | 40 | * | U | 84 | U | 85 | A | 86 | C | 87 | C | 88 | cWW | cWW | tHW | ncWW | |||
| 2 | J3_3MXH_001 | 3MXH | 0.0000 | 2 | R | c-di-GMP riboswitch | G | 14 | A | 16 | C | 17 | A | 18 | G | 19 | G | 20 | G | 21 | * | C | 46 | A | 47 | A | 48 | G | 50 | * | U | 89 | U | 90 | A | 91 | C | 92 | C | 93 | cSH | cWW | cWS | cWW | tHW | cWW | |
| 3 | J3_4YAZ_002 | 4YAZ | 0.4493 | 2 | R | Cyclic di-GMP-I riboswitch | G | 8 | A | 9 | A | 11 | A | 12 | U | 13 | A | 14 | C | 15 | * | G | 40 | A | 41 | A | 42 | G | 44 | * | C | 72 | U | 73 | G | 74 | C | 75 | C | 76 | cSH | cWW | cWS | ncWS | cWW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACAGGG*CAAAG*UUACC | 2 |
| GACAAUAC*GAAAG*CUGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CACAGG*AAA*UAC | 2 |
| ACAAUA*AAA*UGC | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cHS-F-cWS-cWW-F-tHW-cWW-F-cWW-F
- Heat map statistics
- Min 0.42 | Avg 0.31 | Max 0.54
Coloring options: