Motif J3_98597.1 Version J3_98597.1 of this group appears in releases 3.80 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-6 | 5-9 | 5-10 | 7-8 | 7-11 | 9-10 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_5TBW_014 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | A | 2930 | C | 2931 | U | 2932 | A | 2933 | A | 2934 | U | 2935 | A | 2936 | * | U | 2886 | C | 2889 | * | G | 2914 | U | 2915 | U | 2916 | cWW | tWW | ncSs | tSs | cWW | cHW | cWW |
2 | J3_8C3A_011 | 8C3A | 0.0825 | 2 | 1 | LSU rRNA | A | 2902 | C | 2903 | U | 2904 | A | 2905 | A | 2906 | U | 2907 | A | 2908 | * | U | 2858 | C | 2861 | * | G | 2886 | U | 2887 | U | 2888 | cWW | tWW | cSs | tSs | cWW | cHW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAUC*GUU*ACUAAUA | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AU*U*CUAAU | 2 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: