Motif J4_07491.1 Version J4_07491.1 of this group appears in releases 3.2 to 3.97

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7	break		8		9	break		10		11		12		13	1-13	3-7	4-5	5-6	7-8	9-10
1	J4_3RKF_003	3RKF	0.0971	0	Purine riboswitch	C	Guanine riboswitch	A	21	U	22	A	23	A	24	C	25	*	G	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
2	J4_3LA5_001	3LA5	0.0949	0	Purine riboswitch	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
3	J4_1Y27_001	1Y27	0.0571	0	Purine riboswitch	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
4	J4_4XNR_001	4XNR	0.0000	0	Purine riboswitch	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	U	74	U	75	cWW	tWS		cWW	cWW	cWW
5	J4_1Y26_001	1Y26	0.0472	0	Purine riboswitch	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	U	74	U	75	cWW	tWS		cWW	cWW	cWW
6	J4_4LX6_001	4LX6	0.0743	0	Purine riboswitch	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
7	J4_3IVN_001	3IVN	0.0800	0	Purine riboswitch	A	Purine riboswitch	A	12	U	13	A	14	A	15	C	16	*	G	36	G	37	*	C	44	C	45	*	G	63	A	64	C	65	U	66	cWW	tWS		cWW	cWW	cWW
8	J4_3SKI_001	3SKI	0.8595	0	Purine riboswitch	A	RNA (68-MER)	A	30	C	31	A	32	G	33	G	34	*	U	52	G	53	*	C	60	C	61	*	G	78	A	79	C	80	U	81	cWW		cSH	cWW	cWW	cWW
9	J4_3SKL_002	3SKL	0.8689	0	Purine riboswitch	B	RNA (66-MER)	A	29	C	30	A	31	G	32	G	33	*	U	51	G	52	*	C	59	C	60	*	G	77	A	78	C	79	U	80	cWW		cSH	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUAAUAGCC*GACU	3
AUAACGGCC*GACU	2
AUAAUAGCC*GAUU	2
ACAGGUGCC*GACU	2

Non-Watson-Crick part of the motif

Sequence	Counts
UAA***AC	5
UAA***AU	2
CAG***AC	2

Release history

Release	3.2	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97
Date	2018-02-09	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-09-14	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Purine riboswitch (9)
Basepair signature: cWW-F-F-tWS-F-F-cWW-cWW-cWW
Heat map statistics: Min 0.05 | Avg 0.35 | Max 0.87

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Coloring options: Nucleotide numbers

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