Motif J4_07491.1 Version J4_07491.1 of this group appears in releases 3.3 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 3-7 | 4-5 | 5-6 | 7-8 | 9-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_3RKF_003 | 3RKF | 0.0971 | 0 | Purine riboswitch junction | C | Purine riboswitch | A | 21 | U | 22 | A | 23 | A | 24 | C | 25 | * | G | 45 | G | 46 | * | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | cWW | tWS | cWW | cWW | cWW | |
| 2 | J4_3LA5_001 | 3LA5 | 0.0949 | 0 | Purine riboswitch junction | A | Purine riboswitch | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | * | A | 45 | G | 46 | * | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | cWW | tWS | cWW | cWW | cWW | |
| 3 | J4_1Y27_001 | 1Y27 | 0.0571 | 0 | Purine riboswitch junction | X | Purine riboswitch | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | * | A | 45 | G | 46 | * | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | cWW | tWS | cWW | cWW | cWW | |
| 4 | J4_4XNR_001 | 4XNR | 0.0000 | 0 | Purine riboswitch junction | X | Purine riboswitch | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | * | A | 45 | G | 46 | * | C | 53 | C | 54 | * | G | 72 | A | 73 | U | 74 | U | 75 | cWW | tWS | cWW | cWW | cWW | |
| 5 | J4_1Y26_001 | 1Y26 | 0.0472 | 0 | Purine riboswitch junction | X | Purine riboswitch | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | * | A | 45 | G | 46 | * | C | 53 | C | 54 | * | G | 72 | A | 73 | U | 74 | U | 75 | cWW | tWS | cWW | cWW | cWW | |
| 6 | J4_4LX6_001 | 4LX6 | 0.0743 | 0 | Purine riboswitch junction | A | Purine riboswitch | A | 21 | U | 22 | A | 23 | A | 24 | U | 25 | * | A | 45 | G | 46 | * | C | 53 | C | 54 | * | G | 72 | A | 73 | C | 74 | U | 75 | cWW | tWS | cWW | cWW | cWW | |
| 7 | J4_3IVN_001 | 3IVN | 0.0800 | 0 | Purine riboswitch junction | A | Purine riboswitch | A | 12 | U | 13 | A | 14 | A | 15 | C | 16 | * | G | 36 | G | 37 | * | C | 44 | C | 45 | * | G | 63 | A | 64 | C | 65 | U | 66 | cWW | tWS | cWW | cWW | cWW | |
| 8 | J4_3SKI_001 | 3SKI | 0.8595 | 0 | Purine riboswitch junction | A | 2dG-I riboswitch aptamer | A | 30 | C | 31 | A | 32 | G | 33 | G | 34 | * | U | 52 | G | 53 | * | C | 60 | C | 61 | * | G | 78 | A | 79 | C | 80 | U | 81 | cWW | cSH | cWW | cWW | cWW | |
| 9 | J4_3SKL_002 | 3SKL | 0.8689 | 0 | Purine riboswitch junction | B | 2dG-I riboswitch aptamer | A | 29 | C | 30 | A | 31 | G | 32 | G | 33 | * | U | 51 | G | 52 | * | C | 59 | C | 60 | * | G | 77 | A | 78 | C | 79 | U | 80 | cWW | cSH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAAU*AG*CC*GACU | 3 |
| AUAAC*GG*CC*GACU | 2 |
| AUAAU*AG*CC*GAUU | 2 |
| ACAGG*UG*CC*GACU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA***AC | 5 |
| UAA***AU | 2 |
| CAG***AC | 2 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
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| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Purine riboswitch junction (9)
- Basepair signature
- cWW-F-F-tWS-F-F-cWW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.35 | Max 0.87
Coloring options: