Motif J4_15241.3 Version J4_15241.3 of this group appears in releases 4.7 to 4.9

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	break		10		11		12	break		13		14		15		16	break		17		18	1-2	1-18	3-18	5-14	7-11	9-10	12-13	16-17
1	J4_9H3G_013	9H3G	0.1089	1	h1	SSU rRNA	C	100	A	101	U	102	PSU	103	A	104	A	105	A	106	U	107	C	108	*	G	309	C	310	C	311	*	G	359	PSU	360	A	362	C	363	*	G	385	G	386	cSH	cWW	ntHS	tHW	tHW	cWW	cWW	cWW
2	J4_8P9A_021	8P9A	0.0606	1	sR	SSU rRNA	C	99	A	100	U	101	U	102	A	103	A	104	A	105	U	106	C	107	*	G	307	C	308	C	309	*	G	357	U	358	A	360	C	361	*	G	383	G	384	cSH	cWW	ntHS	tHW	ntHW	cWW	cWW	cWW
3	J4_8CRE_021	8CRE	0.0000	1	CM	SSU rRNA	C	99	A	100	U	101	U	102	A	103	A	104	A	105	U	106	C	107	*	G	305	C	306	C	307	*	G	355	U	356	A	358	C	359	*	G	381	G	382	ncSH	cWW	tHS	tHW	ntHW	cWW	cWW	cWW
4	J4_8GLP_015	8GLP	0.1742	1	S2	SSU rRNA	C	98	A2M	99	U	100	U	101	A	102	A	103	A	104	PSU	105	C	106	*	G	355	C	356	C	357	*	G	405	PSU	406	A	408	C	409	*	G	431	G	432	cSH	cWW	ntHS	tHW	tHW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUUAAAUCGCCGUAAC*GG	2
CAU(PSU)AAAUCGCCG(PSU)GAC*GG	1
C(A2M)UUAAA(PSU)CGCCG(PSU)GAC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUUAAAUCUAA*	2
AU(PSU)AAAUC(PSU)GA*	1
(A2M)UUAAA(PSU)C(PSU)GA*	1

Release history

Release	4.7	4.8	4.9
Date	2026-02-25	2026-03-25	2026-04-22
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
Heat map statistics: Min 0.06 | Avg 0.11 | Max 0.21

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Coloring options: Nucleotide numbers

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