#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10break 11 12 13break 14 15 16 171-174-105-96-710-1112-1513-14
1 J4_4GXY_0014GXY0.55243Cobalamin riboswitch junctionACobalamin riboswitchG40G41G42A43A44G45*C61A62C63G64*C72A73C74*G155G156A157C161cWWcWWcWWcWWcWW
2 J4_4FRG_0014FRG0.00002Cobalamin riboswitch junctionBCobalamin riboswitchG18G19A20A21A22G23*C40A41G42A43*U54A55C56*G68A69A70C73cWWncsSncSscWWcWWcWwcWW
3 J4_4FRN_0024FRN0.11092Cobalamin riboswitch junctionBCobalamin riboswitchG18G19A20A21A22G23*C40A41C42A43*U52A53C54*G66A67A68C71cWWncsScWWcWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGGAAG*CACG*CAC*GGAAACC1
GGAAAG*CAGA*UAC*GAAUGC1
GGAAAG*CACA*UAC*GAAUGC1
Non-Watson-Crick part of the motif
SequenceCounts
GGAA*AC*A*GAAAC1
GAAA*AG*A*AAUG1
GAAA*AC*A*AAUG1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.99
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-212025-06-182025-07-16
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Cobalamin riboswitch junction (3)
  • Basepair signature
    cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
    Heat map statistics
    Min 0.11 | Avg 0.27 | Max 0.55
    Help

    Coloring options:

    Copyright 2026 BGSU RNA group. Page generated in 0.0971 s