Motif J4_36296.3 Version J4_36296.3 of this group appears in releases 3.96 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 3-4 | 3-8 | 5-8 | 6-7 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4YCO_001 | 4YCO | 0.3429 | 4 | tRNA junction | D | tRNA | A | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | C | 43 | G | 44 | G | 46 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | cWW | cWW | ||
| 2 | J4_2CSX_001 | 2CSX | 0.0000 | 4 | tRNA junction | C | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | G | 26 | G | 27 | * | C | 43 | A | 44 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | ncHS | cWW | cWW | |
| 3 | J4_3WFS_001 | 3WFS | 0.1990 | 4 | tRNA junction | A | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHW | cWW | cWW | |
| 4 | J4_1QTQ_001 | 1QTQ | 0.4016 | 4 | tRNA junction | B | tRNA | A | 907 | C | 909 | G | 910 | * | C | 925 | A | 926 | C | 927 | * | G | 943 | C | 944 | A | 945 | C | 949 | * | G | 965 | U | 966 | cWW | cWW | cWW | cWW | cWW | |
| 5 | J4_1B23_001 | 1B23 | 0.6424 | 3 | tRNA junction | R | tRNA | U | 7 | A | 9 | A | 10 | * | U | 25 | A | 26 | G | 27 | * | U | 43 | C | 44 | A | 46 | U | 49 | * | A | 65 | A | 66 | cWW | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAG*CAG*CGUGUCC*GU | 1 |
| GUAG*CGG*CAGGUCG*CC | 1 |
| GUAG*CAC*GGUGUCG*CC | 1 |
| AUCG*CAC*GCAUUCC*GU | 1 |
| U(4SU)AA*UAG*UCUAGU*AA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*GUGUC* | 2 |
| UA*G*AGGUC* | 1 |
| UC*A*CAUUC* | 1 |
| (4SU)A*A*CUAG* | 1 |
Release history
| Release | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (5)
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Heat map statistics
- Min 0.20 | Avg 0.39 | Max 0.75
Coloring options: