#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8break 9 10 11 12 13break 14 151-156-78-913-14
1 J4_5FJC_0015FJC0.22620SAM-I riboswitchA SAM-I riboswitchC8A9A10G11A12G13*C41G42*C60A61A62U63U64*A85G86cWWcWWcWWcWW
2 J4_4KQY_0014KQY0.00000SAM-I riboswitchA SAM-I riboswitchC8A9A10G11A12G13*C42A43*U81A82A83A84U85*A109G110cWWcWWcWWcWW
3 J4_4AOB_0014AOB0.29150SAM-I riboswitchA SAM-I riboswitchC8A9A10G11A12G13*C41G42*C60A61A62U63U64*A85G86cWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAGAG*CG*CAAUU*AG2
CAAGAG*CA*UAAAU*AG1
Non-Watson-Crick part of the motif
SequenceCounts
AAGA**AAU*2
AAGA**AAA*1

Release history

Release3.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.96
Date2021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-23
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • SAM-I riboswitch (3)
  • Basepair signature
    cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
    Heat map statistics
    Min 0.23 | Avg 0.19 | Max 0.36
    Help

    Coloring options:

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