Motif J4_43318.1 Version J4_43318.1 of this group appears in releases 4.0 to 4.9

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9	break		10		11		12	break		13		14		15		16		17		18	1-18	2-17	3-9	3-14	4-8	5-6	9-10	11-14	12-13
1	J4_8OI5_002	8OI5	0.0000	0	1	LSU rRNA	C	184	U	185	A	186	U	187	G	188	*	C	204	G	205	U	206	C	207	*	G	211	A	212	G	213	*	C	225	G	226	U	227	G	228	C	229	G	230	cWW	ncWW	ncsS	cHH	cSs	cWW	cWW	tHS	cWW
2	J4_8P9A_013	8P9A	0.1115	0	AR	LSU rRNA	C	185	U	186	A	187	U	188	G	189	*	C	205	G	206	U	207	C	208	*	G	212	A	213	G	214	*	C	226	G	227	U	228	G	229	U	230	G	231	cWW	cwW			ncSs	cWW	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAUGCGUCGAG*CGUGCG	1
CUAUGCGUCGAG*CGUGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAUGUA*GUGC	1
UAUGUA*GUGU	1

Release history

Release	4.0	4.1	4.2	4.3	4.4	4.5	4.6	4.7	4.8	4.9
Date	2025-08-13	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31	2026-01-28	2026-02-25	2026-03-25	2026-04-22
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Heat map statistics: Min 0.11 | Avg 0.06 | Max 0.11

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Coloring options: Nucleotide numbers

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