Motif J4_58434.1 Version J4_58434.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 1-14 | 3-4 | 3-9 | 5-8 | 6-7 | 10-11 | 12-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_2AKE_003 | 2AKE | 0.5969 | 2 | tRNA junction | B | tRNA | G | 7 | G | 9 | G | 10 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | G | 45 | U | 47 | U | 48 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | ncWW | ncWW | ncSH | cWW | |
| 2 | J4_5E81_030 | 5E81 | 0.0000 | 2 | tRNA junction | 3L | tRNA | U | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | U | 43 | U | 44 | G | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | A | 66 | cWW | cWW | ncWW | cWW | |||
| 3 | J4_5E7K_031 | 5E7K | 0.2446 | 2 | tRNA junction | 3L | tRNA | U | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | U | 43 | U | 44 | G | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | A | 66 | cWW | ncWW | cWW | cWW | |||
| 4 | J4_1U0B_001 | 1U0B | 0.3832 | 1 | tRNA junction | A | tRNA | U | 7 | A | 9 | A | 10 | * | U | 25 | A | 26 | G | 27 | * | U | 43 | C | 44 | U | 45 | A | 46 | G | 48 | U | 49 | * | A | 65 | A | 66 | cWW | cWW | cHW | ncWB | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAG*CAG*UUGGUCG*CA | 2 |
| GUGG*CGU*AAGGUUG*UC | 1 |
| UUAA*UAG*UCUAGU*AA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*UGGUC* | 2 |
| UG*G*AGGUU* | 1 |
| UA*A*CUAG* | 1 |
- Annotations
-
- tRNA junction (4)
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW-F-F
- Heat map statistics
- Min 0.24 | Avg 0.42 | Max 0.98
Coloring options: