Motif J4_61477.3 Version J4_61477.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-17 | 3-8 | 4-7 | 5-6 | 9-12 | 10-11 | 13-16 | 14-15 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_7A0S_008 | 7A0S | 0.0703 | 0 | X | LSU rRNA | G | 1763 | A | 1764 | C | 1765 | U | 1766 | G | 1767 | * | C | 1779 | A | 1780 | C | 1781 | A | 1782 | G | 1783 | * | U | 1819 | G | 1820 | A | 1821 | C | 1822 | * | G | 1958 | U | 1959 | A | 1960 | A | 1961 | C | 1962 | cWW | tSW | ntHS | tHS | cWW | tHS | cWW | cWW | |
| 2 | J4_7RQB_007 | 7RQB | 0.0466 | 0 | 1A | LSU rRNA | G | 1772 | A | 1773 | C | 1774 | U | 1775 | G | 1776 | * | C | 1788 | A | 1789 | C | 1790 | A | 1791 | G | 1792 | * | C | 1827 | G | 1828 | A | 1829 | C | 1830 | * | G | 1975 | U | 1976 | A | 1977 | A | 1978 | C | 1979 | cWW | tSW | tHS | tHS | cWW | tHS | cWW | ntHS | cWW |
| 3 | J4_5J7L_025 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | A | 1772 | A | 1773 | C | 1774 | U | 1775 | G | 1776 | * | C | 1788 | A | 1789 | C | 1790 | A | 1791 | G | 1792 | * | U | 1827 | G | 1828 | A | 1829 | C | 1830 | * | G | 1975 | U | 1976 | A | 1977 | A | 1978 | U | 1979 | cWW | tSW | tHS | tHS | cWW | tHS | cWW | ntHS | cWW |
| 4 | J4_4WF9_007 | 4WF9 | 0.0677 | 0 | X | LSU rRNA | G | 1799 | A | 1800 | C | 1801 | U | 1802 | G | 1803 | * | C | 1815 | A | 1816 | C | 1817 | A | 1818 | G | 1819 | * | U | 1854 | G | 1855 | A | 1856 | C | 1857 | * | G | 2002 | U | 2003 | A | 2004 | A | 2005 | C | 2006 | cWW | tSW | tHS | cWW | tHS | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUG*CACAG*UGAC*GUAAC | 2 |
| GACUG*CACAG*CGAC*GUAAC | 1 |
| AACUG*CACAG*UGAC*GUAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACU*ACA*GA*UAA | 4 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Heat map statistics
- Min 0.05 | Avg 0.06 | Max 0.16
Coloring options: