Motif J4_61477.5 Version J4_61477.5 of this group appears in releases 3.91 to 3.96

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	break		11		12		13		14	break		15		16		17		18		19	1-19	2-17	3-8	4-7	5-6	9-12	10-11	13-16	14-15
1	J4_4WF9_007	4WF9	0.0677	0	X	LSU rRNA	G	1799	A	1800	C	1801	U	1802	G	1803	*	C	1815	A	1816	C	1817	A	1818	G	1819	*	U	1854	G	1855	A	1856	C	1857	*	G	2002	U	2003	A	2004	A	2005	C	2006	cWW	tSW		tHS	cWW	tHS	ncWW		cWW
2	J4_5J7L_025	5J7L	0.0000	0	DA	LSU rRNA	A	1772	A	1773	C	1774	U	1775	G	1776	*	C	1788	A	1789	C	1790	A	1791	G	1792	*	U	1827	G	1828	A	1829	C	1830	*	G	1975	U	1976	A	1977	A	1978	U	1979	cWW	tSW	tHS	tHS	cWW	tHS	cWW	ntHS	cWW
3	J4_9DFE_007	9DFE	0.0581	0	1A	LSU rRNA	G	1772	A	1773	C	1774	U	1775	G	1776	*	C	1788	A	1789	C	1790	A	1791	G	1792	*	C	1827	G	1828	A	1829	C	1830	*	G	1975	U	1976	A	1977	A	1978	C	1979	cWW	tSW	tHS	tHS	cWW	tHS	cWW	ntHS	cWW
4	J4_7A0S_008	7A0S	0.0703	0	X	LSU rRNA	G	1763	A	1764	C	1765	U	1766	G	1767	*	C	1779	A	1780	C	1781	A	1782	G	1783	*	U	1819	G	1820	A	1821	C	1822	*	G	1958	U	1959	A	1960	A	1961	C	1962	cWW	tSW	ntHS	tHS	cWW	tHS	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GACUGCACAGUGAC*GUAAC	2
AACUGCACAGUGAC*GUAAU	1
GACUGCACAGCGAC*GUAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUACAGA*UAA	4

Release history

Release	3.91	3.92	3.93	3.94	3.95	3.96
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.07 | Max 0.16

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Coloring options: Nucleotide numbers

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