Motif J4_64075.2 Version J4_64075.2 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 1-18 | 1-20 | 2-19 | 3-4 | 5-6 | 7-11 | 12-13 | 13-18 | 14-17 | 15-16 | 18-20 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V9F_008 | 4V9F | 0.3791 | 1 | 0 | LSU rRNA | C | 1889 | U | 1890 | G | 1891 | * | C | 1946 | G | 1947 | * | C | 1965 | U | 1966 | U | 1967 | A | 1968 | A | 1969 | G | 1970 | G | 1971 | U | 1972 | A | 1973 | G | 1974 | * | U | 2008 | G | 2009 | A | 2010 | A | 2011 | G | 2013 | tsS | cWW | cWH | cWW | cWW | tWW | cSH | tWH | tHS | cWW | cSs |
| 2 | J4_5J7L_026 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | C | 1833 | U | 1834 | 2MG | 1835 | * | C | 1905 | G | 1906 | * | C | 1924 | C | 1925 | U | 1926 | A | 1927 | A | 1928 | G | 1929 | G | 1930 | U | 1931 | A | 1932 | G | 1933 | * | C | 1967 | G | 1968 | A | 1969 | A | 1970 | G | 1972 | tsS | cWW | cWH | cWW | cWW | tWW | cSH | tWH | tHS | cWW | cSs |
| 3 | J4_7RQB_008 | 7RQB | 0.0865 | 1 | 1A | LSU rRNA | U | 1833 | U | 1834 | G | 1835 | * | C | 1905 | G | 1906 | * | C | 1924 | C | 1925 | U | 1926 | A | 1927 | A | 1928 | G | 1929 | G | 1930 | U | 1931 | A | 1932 | G | 1933 | * | C | 1967 | G | 1968 | A | 1969 | A | 1970 | A | 1972 | tsS | cWW | cWH | cWW | cWW | tWW | cSH | tWH | tHS | cWW | |
| 4 | J4_5TBW_007 | 5TBW | 0.1264 | 1 | 1 | LSU rRNA | C | 2192 | U | 2193 | G | 2194 | * | C | 2248 | G | 2249 | * | C | 2267 | U | 2268 | U | 2269 | A | 2270 | A | 2271 | G | 2272 | G | 2273 | U | 2274 | A | 2275 | G | 2276 | * | U | 2310 | G | 2311 | A | 2312 | A | 2313 | G | 2315 | tsS | cWW | cWH | cWW | cWW | ntSW | cSH | tWH | tHS | cWW | cSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUG*CG*CUUAAGGUAG*UGAAUG | 2 |
| CU2MG*CG*CCUAAGGUAG*CGAAUG | 1 |
| UUG*CG*CCUAAGGUAG*CGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U**UUAAGGUA*GAAU | 2 |
| U**CUAAGGUA*GAAU | 1 |
| U**CUAAGGUA*GAAA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Heat map statistics
- Min 0.09 | Avg 0.20 | Max 0.44
Coloring options: