Motif J4_64571.3 Version J4_64571.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 3-6 | 4-5 | 6-7 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_7RQB_003 | 7RQB | 0.1182 | 4 | 1A | LSU rRNA | C | 1270 | A | 1274 | A | 1275 | A | 1276 | * | U | 1294 | C | 1295 | * | G | 1645 | C | 1646 | C | 1648 | * | G | 2009 | G | 2010 | cWW | ntSs | cWW | cWW | cWW |
| 2 | J4_5J7L_021 | 5J7L | 0.0000 | 4 | DA | LSU rRNA | C | 1270 | A | 1274 | A | 1275 | A | 1276 | * | U | 1294 | C | 1295 | * | G | 1645 | C | 1646 | U | 1648 | * | A | 2009 | G | 2010 | cWW | ntSs | cWW | cWW | cWW |
| 3 | J4_7A0S_004 | 7A0S | 0.1086 | 4 | X | LSU rRNA | C | 1283 | A | 1287 | A | 1288 | A | 1289 | * | U | 1307 | C | 1308 | * | G | 1662 | C | 1663 | C | 1665 | * | G | 1992 | G | 1993 | cWW | tSs | cWW | cWW | cWW |
| 4 | J4_4WF9_004 | 4WF9 | 0.4525 | 3 | X | LSU rRNA | C | 1308 | A | 1311 | A | 1312 | G | 1313 | * | C | 1331 | C | 1332 | * | G | 1689 | A | 1690 | C | 1692 | * | G | 2036 | G | 2037 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUAAA*UC*GCGC*GG | 2 |
| CGAUAAA*UC*GCUU*AG | 1 |
| CGAAAG*CC*GAGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAA**CG* | 2 |
| GAUAA**CU* | 1 |
| GAAA**AG* | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.22 | Max 0.46
Coloring options: