Motif J4_64571.5 Version J4_64571.5 of this group appears in releases 3.91 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 3-6 | 4-5 | 6-7 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4WF9_004 | 4WF9 | 0.4525 | 3 | X | LSU rRNA | C | 1308 | A | 1311 | A | 1312 | G | 1313 | * | C | 1331 | C | 1332 | * | G | 1689 | A | 1690 | C | 1692 | * | G | 2036 | G | 2037 | cWW | cWW | cWW | cWW | |
| 2 | J4_7A0S_004 | 7A0S | 0.1086 | 4 | X | LSU rRNA | C | 1283 | A | 1287 | A | 1288 | A | 1289 | * | U | 1307 | C | 1308 | * | G | 1662 | C | 1663 | C | 1665 | * | G | 1992 | G | 1993 | cWW | tSs | cWW | cWW | cWW |
| 3 | J4_5J7L_021 | 5J7L | 0.0000 | 4 | DA | LSU rRNA | C | 1270 | A | 1274 | A | 1275 | A | 1276 | * | U | 1294 | C | 1295 | * | G | 1645 | C | 1646 | U | 1648 | * | A | 2009 | G | 2010 | cWW | ntSs | cWW | cWW | cWW |
| 4 | J4_9DFE_003 | 9DFE | 0.1465 | 4 | 1A | LSU rRNA | C | 1270 | A | 1274 | A | 1275 | A | 1276 | * | U | 1294 | C | 1295 | * | G | 1645 | C | 1646 | C | 1648 | * | G | 2009 | G | 2010 | cWW | ntSs | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUAAA*UC*GCGC*GG | 2 |
| CGAAAG*CC*GAGC*GG | 1 |
| CGAUAAA*UC*GCUU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAA**CG* | 2 |
| GAAA**AG* | 1 |
| GAUAA**CU* | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.22 | Max 0.47
Coloring options: