#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6 7 8break 9 10 11 12 13break 14 15 16break 17 18 19 20 21 22 23 241-242-235-136-107-108-913-1415-1816-17
1 J4_3F2X_0013F2X0.00001FMN riboswitch junctionXFMN riboswitch (RFN element)C8G9G10G11G12C13A14G15*C27G28A29C30C31*G84A85C86*G97G98A99G101A102G103A104G105cWWtSHncsScSWtHScWWcWWcWWcWW
2 J4_6DN2_0016DN20.08531X+YRNA RIBOSWITCH + RNA (56-MER)C8G9G10G11G12C13A14G15*C27G28A29C30C31*G84A85C86*G97G98A99G101A102G103A104G105cWWtSHcSWtHScWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGGGCAG*CGACC*GAC*GGAUGAGAG2
Non-Watson-Crick part of the motif
SequenceCounts
GGGGCA*GAC*A*GAUGAGA2

Release history

Release3.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.994.04.14.24.34.44.54.64.74.84.94.104.114.124.134.144.15
Date2018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-212025-06-182025-07-162025-08-132025-09-102025-10-082025-11-052025-12-032025-12-312026-01-282026-02-252026-03-252026-04-222026-05-202026-06-172026-07-152026-08-122026-09-092026-10-07
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • FMN riboswitch junction (1)
  • (1)
  • Basepair signature
    cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
    Heat map statistics
    Min 0.09 | Avg 0.04 | Max 0.09
    Help

    Coloring options:

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