Motif J4_72305.2 Version J4_72305.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 3-4 | 3-7 | 5-6 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_2D6F_002 | 2D6F | 0.1932 | 2 | tRNA junction | F | tRNA | G | 907 | G | 909 | G | 910 | * | U | 925 | G | 926 | * | C | 944 | G | 945 | A | 947 | A | 949 | * | U | 965 | C | 966 | cWW | ncWW | cHS | cWW | ncWW |
| 2 | J4_4QEI_001 | 4QEI | 0.0000 | 2 | tRNA junction | C | tRNA | C | 7 | G | 9 | G | 10 | * | U | 25 | G | 26 | * | C | 44 | G | 45 | A | 46 | C | 49 | * | G | 65 | G | 66 | cWW | cWW | cHS | cWW | cWW |
| 3 | J4_5E6M_001 | 5E6M | 0.0779 | 2 | tRNA junction | C | tRNA | C | 7 | G | 9 | G | 10 | * | U | 25 | G | 26 | * | C | 44 | G | 45 | A | 46 | C | 49 | * | G | 65 | G | 66 | cWW | cWW | cHS | cWW | cWW |
| 4 | J4_3AL0_001 | 3AL0 | 0.2307 | 2 | tRNA junction | E | tRNA | G | 7 | C | 9 | G | 10 | * | C | 25 | G | 26 | * | U | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHS | ncWW | cWW |
| 5 | J4_5WT1_001 | 5WT1 | 0.7769 | 2 | C | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | * | U | 45 | G | 46 | C | 48 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGG*UG*CGACC*GG | 2 |
| GUGG*UG*CGACA*UC | 1 |
| GUCG*CG*UGGUG*CC | 1 |
| GUAG*CA*UGUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG**GAC* | 3 |
| UC**GGU* | 1 |
| UA**GUC* | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (4)
- (1)
- Basepair signature
- cWW-cSH-cWW-F-cWW-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.34 | Max 0.80
Coloring options: