Motif J4_76096.5 Version J4_76096.5 of this group appears in releases 3.96 to 3.97

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4	break		5		6	break		7		8	1-8	2-3	4-5	6-7
1	J4_5Y85_002	5Y85	0.3856	0	D+C	DNA/RNA (50-MER)	C	6	G	7	*	C	23	C	24	*	G	37	G	38	*	C	12	G	13	cWW	cWW	cWW	cWW
2	J4_8V1I_002	8V1I	0.2305	0	B	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	7	G	8	*	C	18	U	19	*	A	33	C	34	*	G	50	C	51	cWW	cWW	cWW	cWW
3	J4_8K1E_001	8K1E	0.2446	0	A	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	7	G	8	*	C	17	G	18	*	C	34	C	35	*	G	51	C	52	cWW	cWW	cWW	cWW
4	J4_8K0Y_001	8K0Y	0.2001	0	A	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	7	G	8	*	C	17	U	18	*	A	32	C	33	*	G	49	C	50	cWW	cWW	cWW	cWW
5	J4_8V1H_001	8V1H	0.0000	0	A	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	7	G	8	*	C	18	U	19	*	A	33	C	34	*	G	50	C	51	cWW	cWW	cWW	cWW
6	J4_8JY0_001	8JY0	0.3666	0	B	RhoBAST	A	36	G	37	*	C	58	A	59	*	U	7	C	8	*	G	29	U	30	cWW	cWW	cWW	cWW
7	J4_9DXL_001	9DXL	0.4395	0	A	RhoBAST aptamer	A	20	G	21	*	C	42	A	43	*	U	5	C	6	*	G	13	U	14	cWW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGCUAC*GC	3
UCGUAG*CA	2
CGCGCC*GG	1
GGCGCC*GC	1

Non-Watson-Crick part of the motif

Sequence	Counts
***	7

Release history

Release	3.96	3.97
Date	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-cWW-cWW-cWW
Heat map statistics: Min 0.17 | Avg 0.35 | Max 0.73

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Coloring options: Nucleotide numbers

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