Motif J4_77044.2 Version J4_77044.2 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 1-15 | 4-5 | 6-9 | 7-8 | 11-14 | 12-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_5J7L_028 | 5J7L | 0.1127 | 0 | DA | LSU rRNA | G | 2643 | G | 2644 | G | 2645 | C | 2646 | * | G | 2674 | A | 2675 | C | 2676 | * | G | 2731 | G | 2732 | A | 2733 | A | 2734 | G | 2735 | * | U | 2769 | G | 2770 | C | 2771 | cWW | cWW | cWW | cWW | tHS | cWW |
| 2 | J4_7RQB_010 | 7RQB | 0.0000 | 0 | 1A | LSU rRNA | G | 2643 | G | 2644 | G | 2645 | C | 2646 | * | G | 2674 | A | 2675 | C | 2676 | * | G | 2731 | G | 2732 | A | 2733 | A | 2734 | G | 2735 | * | C | 2769 | G | 2770 | C | 2771 | cWW | cWW | cWW | cWW | tHS | cWW |
| 3 | J4_4WF9_009 | 4WF9 | 0.1479 | 0 | X | LSU rRNA | G | 2670 | A | 2671 | G | 2672 | C | 2673 | * | G | 2701 | A | 2702 | C | 2703 | * | G | 2758 | G | 2759 | A | 2760 | C | 2761 | G | 2762 | * | C | 2796 | C | 2797 | C | 2798 | cWW | cWW | cWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GAC*GGAAG*UGC | 1 |
| GGGC*GAC*GGAAG*CGC | 1 |
| GAGC*GAC*GGACG*CCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*A*GAA*G | 2 |
| AG*A*GAC*C | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.09 | Max 0.16
Coloring options: