#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5break 6 7 8 9break 10 11 12 13 14 15 16break 17 181-182-144-75-65-78-119-1016-17
1 J4_5X6B_0015X6B0.00002tRNA junctionP tRNAG7U8A9G10U11*G23C24G26C27*G41C42C43U44A46C47G48*C64C65cWWncSsncWWcWWncWWcWW
2 J4_3ICQ_0013ICQ0.79290tRNA junctionERNA (62-MER)U7U8A9A10C11*G24C25G26C27*G43A44G45G46U47C48C49*G65A66cWWncWWacWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAGU*GCAGC*GCCUUACG*CC1
UUAAC*GCGC*GAGGUCC*GA1
Non-Watson-Crick part of the motif
SequenceCounts
UAG*CAG*CCUUAC*1
UAA*CG*AGGUC*1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.99
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-212025-06-182025-07-16
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA junction (2)
  • Basepair signature
    cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
    Heat map statistics
    Min 0.79 | Avg 0.40 | Max 0.79
    Help

    Coloring options:

    Copyright 2026 BGSU RNA group. Page generated in 0.1425 s