Motif J4_87855.1 Version J4_87855.1 of this group appears in releases 3.95 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 4-7 | 5-6 | 7-8 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8CRE_003 | 8CRE | 0.0000 | 2 | 1 | LSU rRNA | C | 1447 | A | 1449 | A | 1450 | A | 1452 | U | 1453 | * | A | 1471 | G | 1472 | * | U | 1873 | G | 1874 | A | 1875 | U | 1876 | * | A | 2330 | G | 2331 | cWW | ntSs | cWW | cWW | cWW |
| 2 | J4_8P9A_014 | 8P9A | 0.0725 | 2 | AR | LSU rRNA | C | 1451 | A | 1453 | A | 1454 | A | 1456 | U | 1457 | * | A | 1475 | G | 1476 | * | U | 1877 | G | 1878 | A | 1879 | U | 1880 | * | A | 2352 | G | 2353 | cWW | ntSs | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAUAU*AG*UGAU*AG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAUA**GA* | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Heat map statistics
- Min 0.07 | Avg 0.04 | Max 0.07
Coloring options: