Motif J4_88771.1 Version J4_88771.1 of this group appears in releases 3.96 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 1-12 | 1-17 | 2-16 | 3-4 | 5-12 | 6-11 | 7-8 | 9-10 | 13-16 | 14-15 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4LFB_002 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 142 | A | 143 | G | 144 | * | C | 178 | A | 179 | U | 180 | G | 181 | U | 182 | G | 183 | * | C | 194 | A | 195 | A | 196 | A | 197 | G | 198 | * | C | 219 | G | 220 | C | 221 | tsS | cWW | cWW | cWW | tWH | tWH | cSH | cWW | tSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAUGUG*CAAAG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AUGU*AAA*G | 1 |
Release history
| Release | 3.96 |
|---|---|
| Date | 2025-04-23 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: