Motif J4_95838.1 Version J4_95838.1 of this group appears in releases 3.85 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-3 | 4-7 | 5-6 | 8-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_5DH6_001 | 5DH6 | 0.0000 | 0 | A+B | Hammerhead ribozyme (type III) + RNA (20-mer) | A | 15 | C | 16 | * | G | 21 | A | 22 | G | 23 | * | C | 38 | A | 39 | A | 40 | A | 41 | A | 42 | * | U | 6 | DC | 7 | U | 8 | cWW | cWW | cWS | cWW | ntHS | cWW |
| 2 | J4_2QUS_001 | 2QUS | 0.1593 | 0 | A | Hammerhead ribozyme | U | 31 | C | 32 | * | G | 37 | A | 38 | G | 39 | * | C | 50 | A | 51 | A | 52 | A | 53 | A | 54 | * | U | 11 | C | 12 | A | 13 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AC*GAG*CAAAA*U(DC)U | 1 |
| UCA*UC*GAG*CAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A*AAA*(DC) | 1 |
| C**A*AAA | 1 |
Release history
| Release | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-cWW-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.16 | Avg 0.08 | Max 0.16
Coloring options: