Motif J4_98139.1 Version J4_98139.1 of this group appears in releases 4.0 to 4.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 1-14 | 3-6 | 3-8 | 4-5 | 7-11 | 9-10 | 12-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V9F_009 | 4V9F | 0.2237 | 2 | 0 | LSU rRNA | C | 2319 | U | 2320 | A | 2321 | G | 2323 | * | U | 2377 | U | 2378 | G | 2379 | A | 2380 | C | 2381 | * | G | 2407 | A | 2408 | C | 2409 | * | G | 2418 | G | 2420 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 2 | J4_9E6Q_009 | 9E6Q | 0.2007 | 2 | 1 | LSU rRNA | C | 2397 | A | 2398 | A | 2399 | G | 2401 | * | C | 2455 | U | 2456 | G | 2457 | A | 2458 | C | 2459 | * | G | 2485 | G | 2486 | C | 2487 | * | G | 2496 | G | 2498 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 3 | J4_4WF9_008 | 4WF9 | 0.1753 | 2 | X | LSU rRNA | C | 2312 | A | 2313 | A | 2314 | G | 2316 | * | U | 2370 | U | 2371 | G | 2372 | A | 2373 | C | 2374 | * | G | 2397 | G | 2398 | G | 2399 | * | C | 2408 | G | 2410 | cWW | cWW | cWW | cWW | |||
| 4 | J4_9DFE_009 | 9DFE | 0.1309 | 2 | 1A | LSU rRNA | C | 2285 | A | 2286 | A | 2287 | G | 2289 | * | C | 2343 | U | 2344 | G | 2345 | A | 2346 | C | 2347 | * | G | 2370 | G | 2371 | G | 2372 | * | C | 2381 | G | 2383 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 5 | J4_8B0X_013 | 8B0X | 0.0000 | 2 | a | LSU rRNA | C | 2289 | G | 2290 | A | 2291 | G | 2293 | * | U | 2347 | U | 2348 | G | 2349 | A | 2350 | C | 2351 | * | G | 2374 | G | 2375 | U | 2376 | * | A | 2385 | G | 2387 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 6 | J4_7A0S_009 | 7A0S | 0.1896 | 2 | X | LSU rRNA | C | 2264 | A | 2265 | A | 2266 | G | 2268 | * | U | 2322 | U | 2323 | G | 2324 | A | 2325 | C | 2326 | * | G | 2349 | G | 2350 | G | 2351 | * | C | 2360 | G | 2362 | cWW | ncWW | cHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAG*UUGAC*GGG*CGG | 2 |
| CUAUG*UUGAC*GAC*GUG | 1 |
| CAAAG*CUGAC*GGC*GGG | 1 |
| CAAAG*CUGAC*GGG*CGG | 1 |
| CGAAG*UUGAC*GGU*AGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*UGA*G*G | 4 |
| UAU*UGA*A*U | 1 |
| GAA*UGA*G*G | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.19 | Max 0.35
Coloring options: