Motif J5_14788.1 Version J5_14788.1 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | break | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | break | 26 | 27 | 28 | 29 | 30 | 31 | break | 32 | 33 | 34 | 35 | 1-35 | 5-13 | 6-22 | 7-12 | 7-20 | 8-9 | 9-11 | 10-13 | 12-20 | 14-19 | 15-18 | 16-17 | 19-23 | 25-26 | 30-34 | 31-32 | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4V9F_007 | 4V9F | 0.0000 | 3 | 0 | LSU rRNA | C | 2098 | G | 2099 | A | 2100 | A | 2101 | G | 2102 | A | 2103 | C | 2104 | C | 2105 | * | G | 2481 | G | 2482 | U | 2484 | A | 2485 | A | 2486 | C | 2487 | A | 2488 | G | 2489 | * | C | 2533 | C | 2534 | U | 2535 | C | 2536 | G | 2537 | A | 2538 | U | 2539 | G | 2540 | U | 2541 | * | G | 2618 | UR3 | 2619 | U | 2620 | PSU | 2621 | A | 2622 | G | 2623 | * | C | 2641 | G | 2642 | G | 2643 | G | 2646 | cWW | ncWW | tHH | cWW | ntWS | cWW | ntSW | tHH | tHW | ncWW | ncWW | cWW | ncSH | cWW | tHS | cWW |
| 2 | J5_8P9A_014 | 8P9A | 0.1872 | 3 | AR | LSU rRNA | A | 2399 | G | 2400 | A | 2401 | A | 2402 | G | 2403 | A | 2404 | C | 2405 | C | 2406 | * | G | 2815 | G | 2816 | U | 2818 | A | 2819 | A | 2820 | C | 2821 | U | 2822 | G | 2823 | * | C | 2867 | U | 2868 | U | 2869 | C | 2870 | G | 2871 | A | 2872 | U | 2873 | G | 2874 | U | 2875 | * | G | 2952 | U | 2953 | U | 2954 | U | 2955 | A | 2956 | G | 2957 | * | U | 2975 | A | 2976 | G | 2977 | U | 2980 | cWW | ncWW | ncWW | ntWS | cWW | ntSW | tHH | tHW | cWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG | 1 |
| AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAC*GAUAACA*CUCGAUG*(UR3)U(PSU)A*GGCU | 1 |
| GAAGAC*GAUAACU*UUCGAUG*UUUA*AGUU | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-tHH-cWW-F-tHW-F-F-F-F-F-cWW-F
- Heat map statistics
- Min 0.19 | Avg 0.09 | Max 0.19
Coloring options: