Motif J5_15067.1 Version J5_15067.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | break | 15 | 16 | break | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 2-21 | 3-11 | 3-18 | 4-12 | 5-9 | 6-7 | 10-11 | 14-15 | 16-17 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4V9F_003 | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | G | 641 | G | 642 | A | 643 | G | 644 | U | 645 | G | 646 | * | C | 759 | G | 760 | A | 761 | C | 762 | * | G | 902 | U | 903 | U | 904 | C | 905 | * | G | 1300 | C | 1301 | * | G | 1354 | A | 1355 | A | 1356 | A | 1357 | A | 1358 | C | 1360 | cWW | tSH | tSs | tHH | ncWS | tWS | cWW | cWW | cWW | cWW |
| 2 | J5_9E6Q_002 | 9E6Q | 0.0964 | 1 | 1 | LSU rRNA | G | 665 | G | 666 | A | 667 | G | 668 | U | 669 | U | 670 | * | A | 785 | G | 786 | A | 787 | C | 788 | * | G | 927 | U | 928 | U | 929 | C | 930 | * | G | 1323 | C | 1324 | * | G | 1377 | A | 1378 | A | 1379 | G | 1380 | A | 1381 | C | 1383 | cWW | tSH | tSs | tHH | ncWS | tWS | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGUG*CGAC*GUUC*GC*GAAAAUC | 1 |
| GGAGUU*AGAC*GUUC*GC*GAAGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGU*GA*UU**AAAAU | 1 |
| GAGU*GA*UU**AAGAU | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: